As I had to map assembled reads to the genomic sequence, I used BLAT (the BLAST-like Alignment Tool) for that purpose. BLAT was so fast for landing reads to genomic sequence, but it can be slow if reads are so many. I thought it would be so nice to have …
Paper in collaboration with Dr. Tanimoto at Hiroshima University in Japan was published.
Differentiated Embryo Chondrocyte plays a crucial role in DNA damage response via transcriptional regulation under hypoxic conditions DOI:
10.1371/journal.pone.0192136
This study contained my work on the collective intelligence of hypoxic transcriptome from public …
Last summer, our work on the use of FANTOM5 data was published in Scientific Data.
RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes
This article was included in FANTOM5 collection. It was a great pleasure to be published together with FANTOM5 data …
I have continuously updated my blog in Japanese which was hosted in my server at home. The server was broken early this month, and I thought how to resume that.
I published a book for biological data analysis in Japanese which was a clean summary of my blog in Japanese …
Blog in English by bonohu has just been started using Pelican and github. This blog will focus on technical issues on data handling in life science.
The website I referred.
Shell commands to update contents below.
# switched to pelican branch,
git checkout …